STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF36002.1lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (567 aa)    
Predicted Functional Partners:
APF38285.1
Cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.768
APF38050.1
Stringent starvation protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.725
APF36263.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.609
APF38274.1
Thiamine phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.578
APF36051.1
Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.565
APF37893.1
NAD kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.557
APF37959.1
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.555
APF38792.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.516
APF36337.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.516
APF38944.1
glutamate--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.513
Your Current Organism:
Chelatococcus daeguensis
NCBI taxonomy Id: 444444
Other names: C. daeguensis, CCUG 54519, Chelatococcus daeguensis Yoon et al. 2008, KCTC 12979, strain K106
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