STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF36296.1Aconitate hydratase 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (902 aa)    
Predicted Functional Partners:
APF37497.1
Citrate (Si)-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
APF37962.1
Isocitrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.988
APF37393.1
Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.870
APF36249.1
Succinate dehydrogenase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.808
APF38865.1
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.802
APF36335.1
50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.797
APF38308.1
50S ribosomal protein L36; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.793
APF36158.1
50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.789
APF37274.1
30S ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.789
APF37279.1
Ribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.786
Your Current Organism:
Chelatococcus daeguensis
NCBI taxonomy Id: 444444
Other names: C. daeguensis, CCUG 54519, Chelatococcus daeguensis Yoon et al. 2008, KCTC 12979, strain K106
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.