STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF37672.1methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)    
Predicted Functional Partners:
APF37422.1
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.782
APF37487.1
Di-trans,poly-cis-decaprenylcistransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.653
APF37510.1
CTP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.548
APF37689.1
arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.533
APF36579.1
tRNA (guanosine(37)-N1)-methyltransferase TrmD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.492
APF36402.1
DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.457
APF39171.1
tRNA pseudouridine(55) synthase TruB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.402
Your Current Organism:
Chelatococcus daeguensis
NCBI taxonomy Id: 444444
Other names: C. daeguensis, CCUG 54519, Chelatococcus daeguensis Yoon et al. 2008, KCTC 12979, strain K106
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