STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF37681.1serine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)    
Predicted Functional Partners:
APF38807.1
tRNA (guanosine(46)-N7)-methyltransferase TrmB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.839
APF36295.1
Acyl carrier protein; Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.791
APF37205.1
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.791
APF37680.1
5'/3'-nucleotidase SurE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
APF37131.1
cysteine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.760
APF37407.1
valine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.734
APF37701.1
aspartate--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.703
APF36064.1
tryptophan--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.690
APF39024.1
protein-L-isoaspartate O-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.688
APF37899.1
threonine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.683
Your Current Organism:
Chelatococcus daeguensis
NCBI taxonomy Id: 444444
Other names: C. daeguensis, CCUG 54519, Chelatococcus daeguensis Yoon et al. 2008, KCTC 12979, strain K106
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.