STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF37794.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
APF36611.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 
0.924
APF36658.1
Hydroxyacid aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.637
APF37793.1
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.587
APF37795.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.571
APF37792.1
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.536
APF38943.1
Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.440
APF37796.1
5-dehydro-4-deoxy-D-glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.422
Your Current Organism:
Chelatococcus daeguensis
NCBI taxonomy Id: 444444
Other names: C. daeguensis, CCUG 54519, Chelatococcus daeguensis Yoon et al. 2008, KCTC 12979, strain K106
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.