STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF38727.150S ribosomal protein L20; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)    
Predicted Functional Partners:
APF38728.1
50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.992
APF37338.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.990
APF38733.1
Translation initiation factor IF-3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.990
APF36597.1
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.984
APF37484.1
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.984
APF38865.1
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.983
APF36596.1
50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.983
APF37861.1
50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.982
APF37855.1
30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.981
APF37339.1
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.980
Your Current Organism:
Chelatococcus daeguensis
NCBI taxonomy Id: 444444
Other names: C. daeguensis, CCUG 54519, Chelatococcus daeguensis Yoon et al. 2008, KCTC 12979, strain K106
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.