STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
araBRibulokinase. (567 aa)    
Predicted Functional Partners:
araA
Arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.999
ALE77220.1
Ribulose 5-phosphate epimerase.
 
 
 0.997
ALE77724.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.905
ALE80804.1
6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
  
  
  0.825
ALE80422.1
Hypothetical protein.
  
 
 0.820
ALE78667.1
Catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity.
    
  0.807
ALE80084.1
Ribose 5-phosphate isomerase.
    
  0.807
ALE79757.1
6-phosphogluconate dehydrogenase.
     
  0.800
ALE77222.1
Sugar ABC transporter substrate-binding protein.
 
     0.615
ALE80471.1
Hypothetical protein.
  
  
 0.508
Your Current Organism:
Pseudonocardia sp. AL04100510
NCBI taxonomy Id: 445576
Other names: P. sp. AL041005-10, Pseudonocardia sp. AL041005-10
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