STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALE77630.1ABC transporter. (303 aa)    
Predicted Functional Partners:
ALE77631.1
Multidrug ABC transporter permease.
 
 
 0.938
ALE77632.1
Cytochrome C oxidase.
 
   
 0.640
ALE79956.1
cysteinyl-tRNA synthetase.
  
  
 0.573
ALE80076.1
Hypothetical protein.
  
 
 0.555
ALE77189.1
ABC transporter permease.
  
 
 0.537
ALE80286.1
ABC transporter permease.
  
 
 0.537
ALE77887.1
Multidrug ABC transporter ATPase.
 
 0.536
ALE78326.1
Hypothetical protein.
  
 
 0.527
ALE78933.1
ABC transporter.
  
 
 0.527
serS
Hypothetical protein; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
 
 
   0.527
Your Current Organism:
Pseudonocardia sp. AL04100510
NCBI taxonomy Id: 445576
Other names: P. sp. AL041005-10, Pseudonocardia sp. AL041005-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.