Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALE78360.1Hypothetical protein. (590 aa)    
Predicted Functional Partners:
ALE78626.1
Catechol 1,2-dioxygenase.
 
 
 0.953
ALE77764.1
Catechol 1,2-dioxygenase.
 
  
 0.618
ALE78654.1
Cytochrome P450.
  
 
 0.585
ALE77503.1
NADH dehydrogenase.
   
 
 0.540
ALE78548.1
Hypothetical protein.
  
     0.518
ALE80077.1
Threonine aldolase.
 
    
 0.512
ALE80778.1
Hypothetical protein.
  
    0.505
ALE81038.1
Hypothetical protein.
  
     0.493
ALE78047.1
Oxidoreductase.
   
 0.483
ALE77486.1
Hypothetical protein.
  
 0.478
Your Current Organism:
Pseudonocardia sp. AL04100510
NCBI taxonomy Id: 445576
Other names: P. sp. AL041005-10, Pseudonocardia sp. AL041005-10
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