STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALE78589.1Carnitine dehydratase; Belongs to the aldehyde dehydrogenase family. (492 aa)    
Predicted Functional Partners:
ALE77176.1
Polyketide synthase.
  
 0.571
aspA-2
Aspartate ammonia-lyase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.503
ALE78588.1
AraC family transcriptional regulator.
     
 0.488
ALE80156.1
Hypothetical protein.
   
 0.483
ALE80236.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.475
ALE78590.1
Monooxygenase.
       0.472
acnA
Aconitate hydratase; Catalyzes the conversion of citrate to isocitrate.
  
 0.470
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
 0.443
ALE78252.1
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 0.442
ALE79390.1
Phenylalanine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 0.442
Your Current Organism:
Pseudonocardia sp. AL04100510
NCBI taxonomy Id: 445576
Other names: P. sp. AL041005-10, Pseudonocardia sp. AL041005-10
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