STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALE80315.1C4-dicarboxylate ABC transporter permease. (447 aa)    
Predicted Functional Partners:
ALE80317.1
Transferase.
 
    0.697
ALE80316.1
Hypothetical protein.
       0.633
ALE80314.1
Hypothetical protein.
 
     0.597
ALE78226.1
DeoR faimly transcriptional regulator.
 
   
 0.489
ALE80818.1
DeoR faimly transcriptional regulator.
 
   
 0.473
ALE81311.1
C4-dicarboxylate ABC transporter.
 
   
 0.470
ALE79200.1
Hypothetical protein.
  
   
 0.433
Your Current Organism:
Pseudonocardia sp. AL04100510
NCBI taxonomy Id: 445576
Other names: P. sp. AL041005-10, Pseudonocardia sp. AL041005-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.