Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALE77998.1 | ALE78182.1 | WY02_05630 | WY02_06775 | Hypothetical protein. | Hypothetical protein; Contains 3'-5'exonuclease domain. | 0.982 |
ALE77998.1 | ALE79589.1 | WY02_05630 | WY02_15395 | Hypothetical protein. | DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA. | 0.939 |
ALE77998.1 | ALE79711.1 | WY02_05630 | WY02_16165 | Hypothetical protein. | Helicase DnaB; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.541 |
ALE77998.1 | ALE79756.1 | WY02_05630 | WY02_16420 | Hypothetical protein. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.989 |
ALE77998.1 | ALE80873.1 | WY02_05630 | WY02_23550 | Hypothetical protein. | Hypothetical protein. | 0.578 |
ALE77998.1 | ALE81454.1 | WY02_05630 | WY02_27310 | Hypothetical protein. | DNA polymerase III subunit alpha. | 0.982 |
ALE77998.1 | dnaG | WY02_05630 | WY02_25785 | Hypothetical protein. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.502 |
ALE77998.1 | recA | WY02_05630 | WY02_24745 | Hypothetical protein. | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.619 |
ALE77998.1 | rpoB | WY02_05630 | WY02_12520 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.525 |
ALE77998.1 | secA | WY02_05630 | WY02_11400 | Hypothetical protein. | Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | 0.537 |
ALE78182.1 | ALE77998.1 | WY02_06775 | WY02_05630 | Hypothetical protein; Contains 3'-5'exonuclease domain. | Hypothetical protein. | 0.982 |
ALE78182.1 | ALE79589.1 | WY02_06775 | WY02_15395 | Hypothetical protein; Contains 3'-5'exonuclease domain. | DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA. | 0.944 |
ALE78182.1 | ALE79756.1 | WY02_06775 | WY02_16420 | Hypothetical protein; Contains 3'-5'exonuclease domain. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.966 |
ALE78182.1 | ALE80873.1 | WY02_06775 | WY02_23550 | Hypothetical protein; Contains 3'-5'exonuclease domain. | Hypothetical protein. | 0.562 |
ALE78182.1 | ALE81454.1 | WY02_06775 | WY02_27310 | Hypothetical protein; Contains 3'-5'exonuclease domain. | DNA polymerase III subunit alpha. | 0.958 |
ALE78182.1 | dnaG | WY02_06775 | WY02_25785 | Hypothetical protein; Contains 3'-5'exonuclease domain. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.741 |
ALE78182.1 | recA | WY02_06775 | WY02_24745 | Hypothetical protein; Contains 3'-5'exonuclease domain. | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.613 |
ALE78182.1 | rpoB | WY02_06775 | WY02_12520 | Hypothetical protein; Contains 3'-5'exonuclease domain. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.499 |
ALE78182.1 | secA | WY02_06775 | WY02_11400 | Hypothetical protein; Contains 3'-5'exonuclease domain. | Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | 0.651 |
ALE79589.1 | ALE77998.1 | WY02_15395 | WY02_05630 | DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA. | Hypothetical protein. | 0.939 |
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