STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ67417.1HflC protein; HflC and HflK could regulate a protease. (298 aa)    
Predicted Functional Partners:
AKJ67416.1
HflK protein; HflC and HflK could encode or regulate a protease.
 
 
0.995
AKJ70292.2
Cell division protein FtsH; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.833
ftsH
Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 0.833
ALX34845.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.827
AKJ69057.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.827
hflX
GTPase HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
  
  
 0.793
AKJ67418.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.638
AKJ68201.1
Stomatin 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.629
ABW99_00560
Transposase; Frameshifted; incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.566
bamB
Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.564
Your Current Organism:
Pandoraea thiooxydans
NCBI taxonomy Id: 445709
Other names: Burkholderia sp. ATSB16, KACC 12757, LMG 24779, LMG:24779, P. thiooxydans, Pandoraea thiooxydans Anandham et al. 2010, strain ATSB16
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