STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ70363.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)    
Predicted Functional Partners:
AKJ70364.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.686
AKJ67576.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.661
AKJ68817.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.607
AKJ68422.3
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.539
AKJ69471.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
AKJ67186.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
AKJ67962.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.445
AKJ67687.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.439
AKJ68158.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.438
AKJ70249.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.438
Your Current Organism:
Pandoraea thiooxydans
NCBI taxonomy Id: 445709
Other names: Burkholderia sp. ATSB16, KACC 12757, LMG 24779, LMG:24779, P. thiooxydans, Pandoraea thiooxydans Anandham et al. 2010, strain ATSB16
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