Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AKJ67588.1Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)    
Predicted Functional Partners:
AKJ67587.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.946
AKJ67586.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.737
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
  
  
 0.568
AKJ67676.1
Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.558
AKJ67708.1
NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.485
AKJ67581.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.467
AKJ67582.1
Acriflavine resistance protein B; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.467
AKJ67583.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.467
AKJ67584.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.467
AKJ67585.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.467
Your Current Organism:
Pandoraea thiooxydans
NCBI taxonomy Id: 445709
Other names: Burkholderia sp. ATSB16, KACC 12757, LMG 24779, LMG:24779, P. thiooxydans, Pandoraea thiooxydans Anandham et al. 2010, strain ATSB16
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