node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AND67907.1 | AND70819.1 | ATSB10_04530 | ATSB10_33650 | Hypothetical protein; Pfam: ABC transporter. | DNA helicase II; Pfam: UvrD-like helicase C-terminal domain; Pfam: UvrD/REP helicase N-terminal domain. | 0.505 |
AND67907.1 | rep | ATSB10_04530 | ATSB10_26310 | Hypothetical protein; Pfam: ABC transporter. | ATP-dependent DNA helicase Rep; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. | 0.531 |
AND67907.1 | uvrA | ATSB10_04530 | ATSB10_12180 | Hypothetical protein; Pfam: ABC transporter. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.909 |
AND67907.1 | uvrB | ATSB10_04530 | ATSB10_20510 | Hypothetical protein; Pfam: ABC transporter. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.992 |
AND67907.1 | uvrC | ATSB10_04530 | ATSB10_06660 | Hypothetical protein; Pfam: ABC transporter. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.819 |
AND68119.1 | AND68121.1 | ATSB10_06650 | ATSB10_06670 | Protein-tyrosine-phosphatase; SMART: Low molecular weight phosphatase family; PRINTS: LMW phosphotyrosine protein phosphatase signature; Pfam: Low molecular weight phosphotyrosine protein phosphatase. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Pfam: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.495 |
AND68119.1 | kdsB | ATSB10_06650 | ATSB10_06640 | Protein-tyrosine-phosphatase; SMART: Low molecular weight phosphatase family; PRINTS: LMW phosphotyrosine protein phosphatase signature; Pfam: Low molecular weight phosphotyrosine protein phosphatase. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.794 |
AND68119.1 | uvrC | ATSB10_06650 | ATSB10_06660 | Protein-tyrosine-phosphatase; SMART: Low molecular weight phosphatase family; PRINTS: LMW phosphotyrosine protein phosphatase signature; Pfam: Low molecular weight phosphotyrosine protein phosphatase. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.642 |
AND68121.1 | AND68119.1 | ATSB10_06670 | ATSB10_06650 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Pfam: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Protein-tyrosine-phosphatase; SMART: Low molecular weight phosphatase family; PRINTS: LMW phosphotyrosine protein phosphatase signature; Pfam: Low molecular weight phosphotyrosine protein phosphatase. | 0.495 |
AND68121.1 | kdsB | ATSB10_06670 | ATSB10_06640 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Pfam: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.505 |
AND68121.1 | uvrC | ATSB10_06670 | ATSB10_06660 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Pfam: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.699 |
AND70819.1 | AND67907.1 | ATSB10_33650 | ATSB10_04530 | DNA helicase II; Pfam: UvrD-like helicase C-terminal domain; Pfam: UvrD/REP helicase N-terminal domain. | Hypothetical protein; Pfam: ABC transporter. | 0.505 |
AND70819.1 | mutL | ATSB10_33650 | ATSB10_12280 | DNA helicase II; Pfam: UvrD-like helicase C-terminal domain; Pfam: UvrD/REP helicase N-terminal domain. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.845 |
AND70819.1 | radA | ATSB10_33650 | ATSB10_16660 | DNA helicase II; Pfam: UvrD-like helicase C-terminal domain; Pfam: UvrD/REP helicase N-terminal domain. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.563 |
AND70819.1 | uvrA | ATSB10_33650 | ATSB10_12180 | DNA helicase II; Pfam: UvrD-like helicase C-terminal domain; Pfam: UvrD/REP helicase N-terminal domain. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.602 |
AND70819.1 | uvrB | ATSB10_33650 | ATSB10_20510 | DNA helicase II; Pfam: UvrD-like helicase C-terminal domain; Pfam: UvrD/REP helicase N-terminal domain. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.870 |
AND70819.1 | uvrC | ATSB10_33650 | ATSB10_06660 | DNA helicase II; Pfam: UvrD-like helicase C-terminal domain; Pfam: UvrD/REP helicase N-terminal domain. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.710 |
kdsB | AND68119.1 | ATSB10_06640 | ATSB10_06650 | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | Protein-tyrosine-phosphatase; SMART: Low molecular weight phosphatase family; PRINTS: LMW phosphotyrosine protein phosphatase signature; Pfam: Low molecular weight phosphotyrosine protein phosphatase. | 0.794 |
kdsB | AND68121.1 | ATSB10_06640 | ATSB10_06670 | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Pfam: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.505 |
kdsB | uvrC | ATSB10_06640 | ATSB10_06660 | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.644 |