STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AND68797.1Hypothetical protein; Pfam: HNH endonuclease; SMART: HNH nucleases. (122 aa)    
Predicted Functional Partners:
AND70704.1
Hypothetical protein; Pfam: Type IV secretory system Conjugative DNA transfer.
   
 
 0.813
rsfS
Hypothetical protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
   
  
 0.687
AND71233.1
Hypothetical protein.
  
     0.514
AND68795.1
Pfam: RNA pseudouridylate synthase; TIGRFAM: TIGR00093: pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.
       0.494
AND68796.1
23S rRNA (guanine1835-N2)-methyltransferase; Pfam: Methyltransferase small domain; Belongs to the methyltransferase superfamily.
       0.487
AND68798.1
Hypothetical protein; TIGRFAM: TIGR00733: oligopeptide transporter, OPT family; Pfam: OPT oligopeptide transporter protein; TIGRFAM: OPT_sfam: oligopeptide transporter, OPT superfamily.
       0.449
Your Current Organism:
Dyella thiooxydans
NCBI taxonomy Id: 445710
Other names: D. thiooxydans, Dyella sp. ATSB10, Dyella thiooxydans Anandham et al. 2011, KACC 12756, LMG 24673, LMG:24673, strain ATSB10
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.