STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AND69070.1Hypothetical protein; TIGRFAM: VI_zyme: type VI secretion system lysozyme-like protein; Pfam: Gene 25-like lysozyme. (167 aa)    
Predicted Functional Partners:
AND69071.1
Pfam: ImpE protein; Pfam: Tetratricopeptide repeat.
 
    0.992
AND69068.1
Hypothetical protein; TIGRFAM: VI_chp_1: type VI secretion protein, VC_A0111 family; Pfam: Protein of unknown function (DUF1305).
 
  
 0.982
AND69069.1
Type VI secretion system protein ImpG; Pfam: Bacterial protein of unknown function (DUF879); TIGRFAM: VI_chp_6: type VI secretion protein, TIGR03359 family.
 
  
 0.981
AND69055.1
Membrane protein; TIGRFAM: IV_VI_DotU: type IV/VI secretion system protein, DotU family; Pfam: Uncharacterized protein conserved in bacteria (DUF2077); Pfam: OmpA family.
 
  
 0.972
AND69074.1
Hypothetical protein; TIGRFAM: VI_chp_5: type VI secretion protein, VC_A0107 family; Pfam: Protein of unknown function (DUF770).
 
  
 0.967
AND69073.1
TIGRFAM: VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family; Pfam: Protein of unknown function (DUF877).
 
  
 0.962
AND69072.1
Pfam: Protein of unknown function (DUF796).
 
  
 0.948
AND69053.1
Pfam: Uncharacterized protein conserved in bacteria (DUF2094); TIGRFAM: VI_minor_4: type VI secretion-associated protein, BMA_A0400 family.
 
  
 0.941
AND69067.1
Hypothetical protein; SMART: ATPases associated with a variety of cellular activities; Pfam: ATPase family associated with various cellular activities (AAA); Pfam: C-terminal, D2-small domain, of ClpB protein; Pfam: AAA domain (Cdc48 subfamily); SMART: C-terminal, D2-small domain, of ClpB protein; TIGRFAM: VI_ClpV1: type VI secretion ATPase, ClpV1 family; PRINTS: ATP-dependent Clp protease ATP-binding subunit signature; Belongs to the ClpA/ClpB family.
 
  
 0.923
AND69056.1
TIGRFAM: VI_chp_4: type VI secretion protein, VC_A0114 family; Pfam: Bacterial protein of unknown function (DUF876).
 
  
 0.919
Your Current Organism:
Dyella thiooxydans
NCBI taxonomy Id: 445710
Other names: D. thiooxydans, Dyella sp. ATSB10, Dyella thiooxydans Anandham et al. 2011, KACC 12756, LMG 24673, LMG:24673, strain ATSB10
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