STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AND70231.1Hypothetical protein; Pfam: ChrR Cupin-like domain; TIGRFAM: anti_sig_ChrR: anti-sigma factor, putative, ChrR family. (228 aa)    
Predicted Functional Partners:
AND70230.1
Hypothetical protein; Pfam: Sigma-70 region 2; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family.
 
 
 0.965
AND67692.1
Hypothetical protein; Pfam: NAD(P)-binding Rossmann-like domain.
 
  
 0.807
AND67691.1
Pfam: Protein of unknown function (DUF1365).
 
  
 0.709
AND68428.1
RNA polymerase subunit sigma-24; Pfam: Sigma-70 region 2; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family.
 
 
 0.648
AND70232.1
Pfam: Bacterial regulatory helix-turn-helix protein, lysR family; Pfam: LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
       0.512
AND68286.1
Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RpoE_Sigma70: RNA polymerase sigma factor RpoE; Pfam: Sigma-70 region 2.
  
 
 0.410
AND68311.1
TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70 region 2; Pfam: Sigma-70, region 4.
  
 
 0.410
AND68703.1
Hypothetical protein; Pfam: Sigma-70, region 4; Pfam: Sigma-70 region 2; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family.
  
 
 0.410
AND69158.1
Hypothetical protein; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70 region 2.
  
 
 0.410
AND69175.1
Hypothetical protein; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70, region 4; Pfam: Sigma-70 region 2.
  
 
 0.410
Your Current Organism:
Dyella thiooxydans
NCBI taxonomy Id: 445710
Other names: D. thiooxydans, Dyella sp. ATSB10, Dyella thiooxydans Anandham et al. 2011, KACC 12756, LMG 24673, LMG:24673, strain ATSB10
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.