Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AND70657.1Pfam: Protein of unknown function (DUF1328). (57 aa)    
Predicted Functional Partners:
AND70658.1
Hypothetical protein; Pfam: CsbD-like; Belongs to the UPF0337 (CsbD) family.
 
    0.937
AND70016.1
Pfam: Protein of unknown function (DUF1328).
  
     0.762
AND69629.1
Hypothetical protein; Pfam: BON domain; SMART: bacterial OsmY and nodulation domain.
  
    0.675
AND70932.1
Hypothetical protein; Pfam: CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.661
AND70860.1
PRINTS: Bacterioferritin signature; Pfam: Ferritin-like domain.
 
    0.618
AND70767.1
Hypothetical protein; Pfam: Family of unknown function (DUF500).
   
    0.505
Your Current Organism:
Dyella thiooxydans
NCBI taxonomy Id: 445710
Other names: D. thiooxydans, Dyella sp. ATSB10, Dyella thiooxydans Anandham et al. 2011, KACC 12756, LMG 24673, LMG:24673, strain ATSB10
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