Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AND71121.1Hypothetical protein; Pfam: 2OG-Fe dioxygenase. (251 aa)    
Predicted Functional Partners:
AND70986.1
Hypothetical protein; TIGRFAM: AA-adenyl-dom: amino acid adenylation domain; Pfam: AMP-binding enzyme C-terminal domain; Pfam: Phosphopantetheine attachment site; Pfam: AMP-binding enzyme; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.572
AND71120.1
Pfam: Protein of unknown function (DUF1304).
       0.563
AND70676.1
Hypothetical protein.
  
     0.490
AND71282.1
Pfam: Peptidase M16 inactive domain; Pfam: Insulinase (Peptidase family M16).
  
     0.480
AND71122.1
Hypothetical protein.
       0.459
AND71119.1
Hypothetical protein; Pfam: Fatty acid desaturase.
       0.440
AND67890.1
Hypothetical protein.
  
     0.415
Your Current Organism:
Dyella thiooxydans
NCBI taxonomy Id: 445710
Other names: D. thiooxydans, Dyella sp. ATSB10, Dyella thiooxydans Anandham et al. 2011, KACC 12756, LMG 24673, LMG:24673, strain ATSB10
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