STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AND71306.1Lipopolysaccharide ABC transporter ATP-binding protein; Pfam: Branched-chain amino acid ATP-binding cassette transporter; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter. (239 aa)    
Predicted Functional Partners:
AND71308.1
Hypothetical protein; Pfam: Lipopolysaccharide-assembly, LptC-related.
  
 
 0.988
AND71155.1
Hypothetical protein; Pfam: Predicted permease YjgP/YjgQ family.
 
 
 0.987
AND71154.1
Hypothetical protein; Pfam: Predicted permease YjgP/YjgQ family.
   
 0.983
AND71307.1
Hypothetical protein; TIGRFAM: outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA; Pfam: OstA-like protein.
  
  
 0.979
AND69549.1
Pfam: ABC-2 family transporter protein.
   
 0.909
AND71310.1
D-arabinose 5-phosphate isomerase; SMART: Domain in cystathionine beta-synthase and other proteins; TIGRFAM: kpsF: sugar isomerase, KpsF/GutQ family; Pfam: SIS domain; Pfam: CBS domain.
 
  
 0.831
AND71309.1
HAD family hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
 
  
 0.829
lpxA
UDP-N-acetylglucosamine acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.806
lpxD
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
  
 0.703
AND68215.1
Biopolymer transporter ExbB; Pfam: MotA/TolQ/ExbB proton channel family.
 
   
 0.681
Your Current Organism:
Dyella thiooxydans
NCBI taxonomy Id: 445710
Other names: D. thiooxydans, Dyella sp. ATSB10, Dyella thiooxydans Anandham et al. 2011, KACC 12756, LMG 24673, LMG:24673, strain ATSB10
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