STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AND71307.1Hypothetical protein; TIGRFAM: outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA; Pfam: OstA-like protein. (185 aa)    
Predicted Functional Partners:
AND71308.1
Hypothetical protein; Pfam: Lipopolysaccharide-assembly, LptC-related.
  
 
 0.990
AND71306.1
Lipopolysaccharide ABC transporter ATP-binding protein; Pfam: Branched-chain amino acid ATP-binding cassette transporter; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.
  
  
 0.979
lptD
Hypothetical protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
 
 0.891
AND67551.1
Pfam: Flagella basal body rod protein; TIGRFAM: FlgC: flagellar basal-body rod protein FlgC; Pfam: Flagellar basal body rod FlgEFG protein C-terminal; Belongs to the flagella basal body rod proteins family.
    
   0.780
AND71309.1
HAD family hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
  
  
 0.739
AND71310.1
D-arabinose 5-phosphate isomerase; SMART: Domain in cystathionine beta-synthase and other proteins; TIGRFAM: kpsF: sugar isomerase, KpsF/GutQ family; Pfam: SIS domain; Pfam: CBS domain.
  
    0.684
AND71305.1
RNA polymerase subunit sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.627
AND68012.1
Hypothetical protein; Pfam: Uncharacterized ACR, COG1399.
  
     0.498
lptE
Hypothetical protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
  
  
 0.497
bamA
Membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.480
Your Current Organism:
Dyella thiooxydans
NCBI taxonomy Id: 445710
Other names: D. thiooxydans, Dyella sp. ATSB10, Dyella thiooxydans Anandham et al. 2011, KACC 12756, LMG 24673, LMG:24673, strain ATSB10
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