Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKH37238.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (55 aa)    
Predicted Functional Partners:
AKH37591.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
 
    0.796
AKH37743.1
General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
 
    0.796
AKH39585.1
General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.795
AKH37086.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.730
AKH38877.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.728
AKH38279.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.724
AKH39560.1
Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.566
AKH36615.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.509
AKH38436.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
AKH39738.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.430
Your Current Organism:
Nitrosomonas communis
NCBI taxonomy Id: 44574
Other names: N. communis, Nitrosomonas communis Koops et al. 2001, strain Nm 2
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