STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKH37445.1Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)    
Predicted Functional Partners:
AKH37446.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.925
AKH39475.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.838
AKH37127.1
Squalene--hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.810
AKH37220.1
Hopanoid biosynthesis associated RND transporter like protein HpnN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.804
AKH37732.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.804
AKH37126.1
Phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.787
AKH37160.1
NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.769
AKH37128.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.755
AKH37159.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.583
AKH39535.1
Multicopper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.492
Your Current Organism:
Nitrosomonas communis
NCBI taxonomy Id: 44574
Other names: N. communis, Nitrosomonas communis Koops et al. 2001, strain Nm 2
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