STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP56894.1methylated-DNA-[protein]-cysteine S-methyltransferase. (167 aa)    
Predicted Functional Partners:
xerD
Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
     0.858
htpG
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
   
   0.557
SFP56828.1
Hypothetical protein.
       0.516
SFQ02313.1
Metal binding domain of Ada.
 
  
 0.461
SFP73450.1
Universal stress protein A.
   
    0.445
SFQ05653.1
Nucleotide-binding universal stress protein, UspA family.
   
    0.445
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.440
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
    
   0.440
SFP90127.1
A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs.
 
   
 0.417
SFP63373.1
CDP-4-dehydro-6-deoxyglucose reductase.
      
 0.405
Your Current Organism:
Nitrosomonas cryotolerans
NCBI taxonomy Id: 44575
Other names: N. cryotolerans
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