STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY50869.1tRNA_anti-like. (126 aa)    
Predicted Functional Partners:
SDY50910.1
OmpA family protein.
       0.664
SDY50951.1
TraX protein.
       0.634
SDY50993.1
Hypothetical protein.
       0.634
SDY51044.1
Transglycosylase SLT domain-containing protein.
       0.565
SDY51082.1
TrbM protein.
       0.558
SDY51129.1
Type IV secretion system protein TrbL.
       0.524
SDY51175.1
Hypothetical protein.
       0.521
SDY51214.1
Entry exclusion lipoprotein TrbK.
       0.521
SDY51258.1
P-type conjugative transfer protein TrbJ.
       0.511
SDY51307.1
Type IV secretion system protein VirB10.
       0.489
Your Current Organism:
Nitrosomonas halophila
NCBI taxonomy Id: 44576
Other names: N. halophila, Nitrosomonas halophila Koops et al. 2001, strain Nm 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.