STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY61109.1Oligopeptidase A. (699 aa)    
Predicted Functional Partners:
SDY61151.1
Dihydroorotase.
       0.667
SDX59257.1
Pectinacetylesterase.
  
  
 0.620
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
    0.595
SDY61221.1
Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase.
       0.460
SDY61253.1
Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.460
SDY61293.1
Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
  
  
 0.440
SDY36164.1
Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
  
 
 
 0.434
Your Current Organism:
Nitrosomonas halophila
NCBI taxonomy Id: 44576
Other names: N. halophila, Nitrosomonas halophila Koops et al. 2001, strain Nm 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.