Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
ALQ50557.1Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)    
Predicted Functional Partners:
ALQ50556.1
Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.950
ALQ50558.1
Addiction module protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.583
ATY38_09445
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.511
ALQ50088.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.489
ALQ50274.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.489
ALQ50705.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.489
ALQ50963.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.489
ALQ52551.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.489
ALQ51420.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.489
ALQ50086.1
Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.466
Your Current Organism:
Nitrosomonas ureae
NCBI taxonomy Id: 44577
Other names: N. ureae, Nitrosomonas ureae Koops et al. 2001, strain Nm 10
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