Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALQ51184.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)    
Predicted Functional Partners:
ALQ49775.1
Cytochrome C554; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
ALQ50933.1
Cytochrome C554; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
ALQ51532.1
Cytochrome C554; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
ALQ52438.1
Cytochrome C554; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
ALQ51590.1
Adhesin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.761
ALQ51981.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.761
ALQ51617.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.760
ALQ50147.1
Ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.751
ALQ50875.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.750
ALQ51246.1
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.741
Your Current Organism:
Nitrosomonas ureae
NCBI taxonomy Id: 44577
Other names: N. ureae, Nitrosomonas ureae Koops et al. 2001, strain Nm 10
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