STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Emin_0135Nucleoside H+ symporter; TIGRFAM: nucleoside transporter; PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: fps:FP1711 major facilitator superfamily (MFS), H+ symporter (NHS) family, nucleoside permease. (414 aa)    
Predicted Functional Partners:
pheS
TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: pmy:Pmen_1980 phenylalanyl-tRNA synthetase subunit alpha; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
       0.719
Emin_0136
PFAM: protein of unknown function DUF520; KEGG: chy:CHY_1197 nucleotide-binding protein; Belongs to the UPF0234 family.
       0.718
pheT
KEGG: hch:HCH_04574 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.717
Emin_0139
Hypothetical protein; KEGG: mmu:19360 RAD50 homolog (S. cerevisiae).
       0.613
Emin_0141
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: chy:CHY_2201 recombination factor protein RarA.
       0.536
Emin_0140
Hypothetical protein.
       0.526
Emin_0755
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase_; KEGG: cth:Cthe_0423 iron-containing alcohol dehydrogenase.
  
  
 0.478
Emin_0772
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase_; KEGG: mar:MAE_49340 aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.478
Emin_0488
Putative fucose permease; PFAM: major facilitator superfamily MFS_1; KEGG: cbh:CLC_1374 major facilitator superfamily protein.
  
  
 0.459
Your Current Organism:
Elusimicrobium minutum
NCBI taxonomy Id: 445932
Other names: E. minutum Pei191, Elusimicrobium minutum Pei191, Elusimicrobium minutum str. Pei191, Elusimicrobium minutum strain Pei191
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