STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Emin_1028PFAM: regulatory protein MarR; KEGG: bha:BH2164 hypothetical protein. (167 aa)    
Predicted Functional Partners:
Emin_1027
PFAM: outer membrane efflux protein; KEGG: ppr:PBPRB0513 hypothetical protein.
  
  
 0.781
Emin_1026
PFAM: secretion protein HlyD family protein; KEGG: pdi:BDI_0141 hypothetical protein.
  
  
 0.719
Emin_1024
KEGG: azc:AZC_1640 hypothetical protein.
       0.666
Emin_1023
KEGG: azc:AZC_1640 hypothetical protein.
       0.664
Emin_1025
PFAM: ABC-2 type transporter; KEGG: oan:Oant_4807 putative permease component of ABC transporter.
       0.664
Emin_1022
KEGG: det:DET1461 lipoprotein, putative.
       0.566
Emin_1101
Polyketide synthase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: rrs:RoseRS_2905 beta-ketoacyl synthase.
  
  
 0.529
Emin_1350
TIGRFAM: PTS system, glucose subfamily, IIA subunit; phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; sugar-specific permease EIIA 1 domain; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: pfl:PFL_4931 phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.
  
  
 0.435
Emin_0995
Non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bld:BLi00401 lichenysin synthetase A.
  
  
 0.414
Emin_1214
Diguanylate cyclase with GAF sensor; KEGG: chy:CHY_0140 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GAF domain protein.
   
  
 0.409
Your Current Organism:
Elusimicrobium minutum
NCBI taxonomy Id: 445932
Other names: E. minutum Pei191, Elusimicrobium minutum Pei191, Elusimicrobium minutum str. Pei191, Elusimicrobium minutum strain Pei191
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