STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Emin_1041PFAM: regulatory protein TetR; KEGG: pol:Bpro_3451 transcriptional regulator, TetR family. (208 aa)    
Predicted Functional Partners:
Emin_1042
ABC transporter related; PFAM: outer membrane efflux protein; KEGG: rpe:RPE_2748 type I secretion outer membrane protein, TolC family.
     
 0.780
Emin_1043
ABC transporter related; KEGG: bba:Bd1875 putative protein secretion protein, HlyD family.
  
  
 0.779
Emin_1044
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bba:Bd1876 ABC-type multidrug transport system, ATPase component.
     
 0.747
Emin_1045
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bba:Bd1877 ABC transporter multidrug ATP-binding protein.
     
 0.747
Emin_1046
PFAM: ABC-2 type transporter; KEGG: bba:Bd1878 ABC-type multidrug transporter permease protein.
       0.736
Emin_1047
PFAM: ABC-2 type transporter; KEGG: bba:Bd1879 ABC-type multidrug transporter permease protein.
       0.736
Emin_1101
Polyketide synthase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: rrs:RoseRS_2905 beta-ketoacyl synthase.
     
 0.722
Emin_1040
Dehydrogenase family protein; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: chy:CHY_1057 hypothetical protein.
       0.505
Emin_1214
Diguanylate cyclase with GAF sensor; KEGG: chy:CHY_0140 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GAF domain protein.
   
 
 0.471
Emin_0995
Non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bld:BLi00401 lichenysin synthetase A.
     
 0.437
Your Current Organism:
Elusimicrobium minutum
NCBI taxonomy Id: 445932
Other names: E. minutum Pei191, Elusimicrobium minutum Pei191, Elusimicrobium minutum str. Pei191, Elusimicrobium minutum strain Pei191
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