STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Emin_1370C-terminal domain of SecA-like putative metal-binding protein; PFAM: SEC-C motif domain protein; KEGG: csc:Csac_1325 preprotein translocase, SecA subunit. (135 aa)    
Predicted Functional Partners:
Emin_1368
PFAM: Peptidase M23; KEGG: pca:Pcar_2472 metalloendopeptidase-like membrane protein.
       0.773
Emin_1369
KEGG: bba:Bd2390 hypothetical protein.
       0.773
Emin_1367
Putative phosphotransacetylase; PFAM: phosphate acetyl/butaryl transferase; KEGG: cbf:CLI_3609 phosphate butyryltransferase.
       0.610
Emin_1371
PilE-like protein; KEGG: syn:sll1694 cyanobacterial pilin.
       0.570
buk
TIGRFAM: butyrate kinase; PFAM: acetate and butyrate kinase; KEGG: cpe:CPE2347 butyrate kinase; Belongs to the acetokinase family.
       0.563
Emin_1363
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: amt:Amet_2023 dihydrolipoamide dehydrogenase.
       0.475
Emin_1364
Hypothetical protein.
       0.475
Emin_1365
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: aba:Acid345_2117 RNA methyltransferase TrmH, group 1.
       0.475
Your Current Organism:
Elusimicrobium minutum
NCBI taxonomy Id: 445932
Other names: E. minutum Pei191, Elusimicrobium minutum Pei191, Elusimicrobium minutum str. Pei191, Elusimicrobium minutum strain Pei191
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