STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI26849.1AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase. (347 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
   0.854
SDI26825.1
2-Methylisocitrate lyase, PEP mutase family.
 
     0.832
SDI26799.1
AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase.
 
  
0.812
SDI26895.1
Protein N-acetyltransferase, RimJ/RimL family.
       0.683
SDI26919.1
Mannose-6-phosphate isomerase, cupin superfamily.
       0.676
SDI26875.1
Protein of unknown function.
       0.675
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.659
yfaY
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
     
 0.497
recA
Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
  
 0.492
surE
5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
    
 0.489
Your Current Organism:
Chryseobacterium jejuense
NCBI taxonomy Id: 445960
Other names: C. jejuense, Chryseobacterium jejuense Weon et al. 2008 emend. Montero-Calasanz et al. 2014, Chryseobacterium jejuense Weon et al. 2008 emend. Wu et al. 2013, Chryseobacterium sp. JS17-8, DSM 19299, KACC 12501, strain JS17-8
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