STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI51872.1Thrombospondin type 3 repeat-containing protein. (503 aa)    
Predicted Functional Partners:
SDI56685.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
 
 
 0.714
oprF_2
OmpA-OmpF porin, OOP family.
  
  
 
0.673
yiaD_2
Chemotaxis protein MotB.
  
 
 0.660
oprF_1
OmpA-OmpF porin, OOP family.
  
  
 
0.647
SDI56750.1
Putative porin.
  
     0.600
lolC
Lipoprotein-releasing system permease protein.
  
 
   0.595
SDJ87005.1
Protein of unknown function.
  
 
 0.592
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.576
SDI38927.1
Outer membrane lipoprotein-sorting protein.
  
 
 
 0.567
SDJ58850.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
    
  0.533
Your Current Organism:
Chryseobacterium jejuense
NCBI taxonomy Id: 445960
Other names: C. jejuense, Chryseobacterium jejuense Weon et al. 2008 emend. Montero-Calasanz et al. 2014, Chryseobacterium jejuense Weon et al. 2008 emend. Wu et al. 2013, Chryseobacterium sp. JS17-8, DSM 19299, KACC 12501, strain JS17-8
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