STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaS_4Transcriptional regulator, AraC family. (268 aa)    
Predicted Functional Partners:
btr_1
AraC-type DNA-binding protein.
  
 
   0.722
rhaS_1
AraC-type DNA-binding protein.
  
 
   0.649
btr_12
Transcriptional regulator, AraC family.
  
 
   0.647
yeaN
MFS transporter, CP family, cyanate transporter.
 
     0.637
soxS_5
Transcriptional regulator, AraC family.
 
 
   0.617
adaA_3
Transcriptional regulator, AraC family.
  
 
   0.600
rhaS_5
AraC-type DNA-binding protein.
 
 
 0.539
adaA_7
AraC-type DNA-binding protein.
  
 
   0.483
rpoD
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.438
melR
Helix-turn-helix domain-containing protein.
  
 
   0.408
Your Current Organism:
Chryseobacterium jejuense
NCBI taxonomy Id: 445960
Other names: C. jejuense, Chryseobacterium jejuense Weon et al. 2008 emend. Montero-Calasanz et al. 2014, Chryseobacterium jejuense Weon et al. 2008 emend. Wu et al. 2013, Chryseobacterium sp. JS17-8, DSM 19299, KACC 12501, strain JS17-8
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