STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW15_08950TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1028 aa)    
Predicted Functional Partners:
IW15_08955
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.584
IW15_14270
Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.548
IW15_10285
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.531
IW15_12960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.518
IW15_19285
Glycan metabolism protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.498
IW15_13560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.478
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.461
IW15_02135
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.444
IW15_02915
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.443
IW15_10665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.440
Your Current Organism:
Chryseobacterium soli
NCBI taxonomy Id: 445961
Other names: C. soli, Chryseobacterium soli Weon et al. 2008 emend. Hahnke et al. 2016, Chryseobacterium sp. JS6-6, DSM 19298, KACC 12502, strain JS6-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.