STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW15_12150Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)    
Predicted Functional Partners:
IW15_12145
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.961
IW15_12160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.853
IW15_18425
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.
 
   0.806
IW15_18435
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.794
IW15_15000
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.783
IW15_04910
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.732
IW15_09120
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.629
IW15_19815
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.598
IW15_02170
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.597
IW15_17455
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.594
Your Current Organism:
Chryseobacterium soli
NCBI taxonomy Id: 445961
Other names: C. soli, Chryseobacterium soli Weon et al. 2008 emend. Hahnke et al. 2016, Chryseobacterium sp. JS6-6, DSM 19298, KACC 12502, strain JS6-6
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.