STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW15_13870Glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (888 aa)    
Predicted Functional Partners:
IW15_13770
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.777
IW15_13875
Sugar dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.569
IW15_03375
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.447
glgB
Glycogen branching protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.447
IW15_21530
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.447
IW15_13880
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.404
IW15_13885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.404
Your Current Organism:
Chryseobacterium soli
NCBI taxonomy Id: 445961
Other names: C. soli, Chryseobacterium soli Weon et al. 2008 emend. Hahnke et al. 2016, Chryseobacterium sp. JS6-6, DSM 19298, KACC 12502, strain JS6-6
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.