STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW15_19480Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)    
Predicted Functional Partners:
IW15_20480
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.983
IW15_16405
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.975
IW15_18755
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.964
IW15_16535
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.943
IW15_17670
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.941
IW15_20350
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.853
IW15_06010
RNA polymerase sigma54 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.835
IW15_03380
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.766
IW15_16400
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.765
IW15_16415
Chemotaxis protein CheR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.677
Your Current Organism:
Chryseobacterium soli
NCBI taxonomy Id: 445961
Other names: C. soli, Chryseobacterium soli Weon et al. 2008 emend. Hahnke et al. 2016, Chryseobacterium sp. JS6-6, DSM 19298, KACC 12502, strain JS6-6
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