STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IW15_19540ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)    
Predicted Functional Partners:
IW15_19535
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.785
IW15_07355
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.779
IW15_05945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.747
IW15_03005
Beta-carotene 15,15'-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.740
IW15_12205
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.721
IW15_10295
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.709
IW15_06355
Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.696
IW15_20875
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
IW15_06015
AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.670
Your Current Organism:
Chryseobacterium soli
NCBI taxonomy Id: 445961
Other names: C. soli, Chryseobacterium soli Weon et al. 2008 emend. Hahnke et al. 2016, Chryseobacterium sp. JS6-6, DSM 19298, KACC 12502, strain JS6-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.