STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCI82280.1CRISPR type I-E/ECOLI-associated protein CasA/Cse1. (554 aa)    
Predicted Functional Partners:
SCI82312.1
CRISPR-associated Cse2 family protein.
 
 
 0.999
SCI82343.1
CRISPR-associated protein Cas7/Cse4/CasC%2C subtype I-E/ECOLI.
 
 
 0.998
SCI82375.1
CRISPR-associated protein Cas5/CasD%2C subtype I-E/ECOLI.
 
 
 0.998
SCI82235.1
Helicase Cas3.
 
 0.995
SCI82409.1
CRISPR-associated protein Cas6/Cse3/CasE%2C subtype I-E/ECOLI.
 
 
 
 0.992
ygbT
CRISPR-associated endonuclease Cas1%2C subtype I-E/ECOLI.
 
  
 0.902
polC_1
DNA polymerase III polC-type.
 
   
 0.849
SCI82204.1
Uncharacterised protein.
       0.428
Your Current Organism:
uncultured Lachnospira sp.
NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.