STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCI85998.1Uncharacterised protein. (1114 aa)    
Predicted Functional Partners:
SCI85959.1
Eco57I restriction-modification methylase.
     0.993
rpoA
DNA-directed RNA polymerase subunit alpha.
    
  0.989
SCI84754.1
DNA-directed RNA polymerase subunit omega.
    
  0.988
rpoB
DNA-directed RNA polymerase subunit beta.
   
  0.987
polA
DNA polymerase I.
  
 0.961
rpoC
DNA-directed RNA polymerase subunit beta'.
   
  0.954
SCJ78747.1
Uncharacterised protein.
    
  0.951
SCJ19025.1
Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon.
   
 0.923
dinG
Probable ATP-dependent helicase dinG homolog.
   
 0.923
SCJ05810.1
Hef nuclease.
   
 0.786
Your Current Organism:
uncultured Lachnospira sp.
NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.