STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypdC_2Uncharacterized HTH-type transcriptional regulator ypdC. (331 aa)    
Predicted Functional Partners:
melR_4
Melibiose operon regulatory protein.
  
 
   0.789
SCI95219.1
Uncharacterised protein.
       0.773
soxS
Regulatory protein soxS.
  
     0.771
btr_1
Bacillibactin transport regulator.
  
     0.770
rhaR_1
L-rhamnose operon transcriptional activator rhaR.
  
     0.770
adaA_1
Methylphosphotriester-DNA--protein-cysteine S-methyltransferase.
  
 
   0.769
ypdC_5
Uncharacterized HTH-type transcriptional regulator ypdC.
  
     0.769
btr_12
Bacillibactin transport regulator.
  
     0.768
rhaS_2
L-rhamnose operon regulatory protein rhaS.
  
     0.767
rhaS_5
L-rhamnose operon regulatory protein rhaS.
  
     0.766
Your Current Organism:
uncultured Lachnospira sp.
NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.