Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCI95443.1 | SCJ12056.1 | SAMEA3545430_00332 | SAMEA3545430_00738 | L%2CD-carboxypeptidase A. | GBS Bsp-like repeat. | 0.517 |
SCI95443.1 | atl | SAMEA3545430_00332 | SAMEA3545430_01202 | L%2CD-carboxypeptidase A. | AtlE. | 0.626 |
SCI95443.1 | cwlC | SAMEA3545430_00332 | SAMEA3545430_01449 | L%2CD-carboxypeptidase A. | Sporulation-specific N-acetylmuramoyl-L-alanine amidase. | 0.781 |
SCJ12056.1 | SCI95443.1 | SAMEA3545430_00738 | SAMEA3545430_00332 | GBS Bsp-like repeat. | L%2CD-carboxypeptidase A. | 0.517 |
SCJ12056.1 | SCJ12083.1 | SAMEA3545430_00738 | SAMEA3545430_00739 | GBS Bsp-like repeat. | Uncharacterised protein. | 0.706 |
SCJ12056.1 | SCJ30931.1 | SAMEA3545430_00738 | SAMEA3545430_01167 | GBS Bsp-like repeat. | CHAP domain. | 0.543 |
SCJ12056.1 | SCJ31331.1 | SAMEA3545430_00738 | SAMEA3545430_01179 | GBS Bsp-like repeat. | Uncharacterised protein. | 0.569 |
SCJ12056.1 | SCJ63335.1 | SAMEA3545430_00738 | SAMEA3545430_02050 | GBS Bsp-like repeat. | Ti-type conjugative transfer relaxase TraA. | 0.596 |
SCJ12056.1 | SCJ71400.1 | SAMEA3545430_00738 | SAMEA3545430_02347 | GBS Bsp-like repeat. | Uncharacterized conserved protein%2C contains RING Zn-finger. | 0.753 |
SCJ12056.1 | SCJ88414.1 | SAMEA3545430_00738 | SAMEA3545430_03305 | GBS Bsp-like repeat. | Uncharacterized protein with a bacterial SH3 domain homologue. | 0.796 |
SCJ12056.1 | atl | SAMEA3545430_00738 | SAMEA3545430_01202 | GBS Bsp-like repeat. | AtlE. | 0.581 |
SCJ12056.1 | cwlC | SAMEA3545430_00738 | SAMEA3545430_01449 | GBS Bsp-like repeat. | Sporulation-specific N-acetylmuramoyl-L-alanine amidase. | 0.809 |
SCJ12056.1 | mrcA | SAMEA3545430_00738 | SAMEA3545430_01542 | GBS Bsp-like repeat. | Penicillin-binding protein 1A. | 0.595 |
SCJ12083.1 | SCJ12056.1 | SAMEA3545430_00739 | SAMEA3545430_00738 | Uncharacterised protein. | GBS Bsp-like repeat. | 0.706 |
SCJ30931.1 | SCJ12056.1 | SAMEA3545430_01167 | SAMEA3545430_00738 | CHAP domain. | GBS Bsp-like repeat. | 0.543 |
SCJ30931.1 | SCJ88414.1 | SAMEA3545430_01167 | SAMEA3545430_03305 | CHAP domain. | Uncharacterized protein with a bacterial SH3 domain homologue. | 0.505 |
SCJ30931.1 | cwlC | SAMEA3545430_01167 | SAMEA3545430_01449 | CHAP domain. | Sporulation-specific N-acetylmuramoyl-L-alanine amidase. | 0.563 |
SCJ31331.1 | SCJ12056.1 | SAMEA3545430_01179 | SAMEA3545430_00738 | Uncharacterised protein. | GBS Bsp-like repeat. | 0.569 |
SCJ63335.1 | SCJ12056.1 | SAMEA3545430_02050 | SAMEA3545430_00738 | Ti-type conjugative transfer relaxase TraA. | GBS Bsp-like repeat. | 0.596 |
SCJ71400.1 | SCJ12056.1 | SAMEA3545430_02347 | SAMEA3545430_00738 | Uncharacterized conserved protein%2C contains RING Zn-finger. | GBS Bsp-like repeat. | 0.753 |
page 1 of 3