STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abfA_1Alpha-N-arabinofuranosidase. (499 aa)    
Predicted Functional Partners:
uxaC
Uronate isomerase.
     
 0.962
xynB_3
Beta-xylosidase.
  
  
 0.903
xylA_1
Xylosidase/arabinosidase.
 
  
  0.896
araA
L-arabinose isomerase.
 
 
 0.881
abfA_3
Alpha-N-arabinofuranosidase.
 
  
 
0.811
SCJ78835.1
L-arabinose isomerase.
  
 
 0.798
SCJ64301.1
Alpha-N-arabinofuranosidase 1 precursor.
  
 
 
0.782
SCJ77926.1
Alpha-N-arabinofuranosidase 1 precursor.
  
 
 
0.781
yicI_3
Alpha-xylosidase.
       0.741
abfA_2
Alpha-N-arabinofuranosidase.
 
  
 
0.740
Your Current Organism:
uncultured Lachnospira sp.
NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.