STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynB_2Beta-xylosidase. (549 aa)    
Predicted Functional Partners:
SCJ13898.1
Uncharacterised protein.
    
  0.837
SCJ74249.1
Uncharacterised protein.
  
  
  0.751
SCJ05237.1
Uncharacterised protein.
  
 
  0.733
SCJ01631.1
Uncharacterised protein.
  
 
  0.719
araA
L-arabinose isomerase.
 
 
 0.713
uxaC
Uronate isomerase.
    
 0.671
pehA
Endo-polygalacturonase precursor.
 
 
  0.638
xynB_3
Beta-xylosidase.
  
  
0.611
SCJ55542.1
Reducing end xylose-releasing exo-oligoxylanase.
  
 0.597
SCJ13855.1
Maltose-binding periplasmic proteins/domains.
 
     0.590
Your Current Organism:
uncultured Lachnospira sp.
NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.