STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCJ18088.1Divergent AAA domain. (247 aa)    
Predicted Functional Partners:
hsdR
Type-1 restriction enzyme R protein.
  
    0.856
SCJ18059.1
Uncharacterised protein.
       0.569
SCJ27268.1
Uncharacterised protein.
  
    0.494
smc_1
Chromosome partition protein Smc.
  
    0.491
SCJ12697.1
Predicted ATPase.
  
    0.491
SCJ18026.1
EcoKI restriction-modification system protein HsdS.
  
    0.491
SCJ88720.1
EcoKI restriction-modification system protein HsdS.
  
    0.491
SCJ18155.1
Predicted AAA-ATPase.
       0.433
SCJ18226.1
Bacteriophage protein gp37.
       0.421
afr
1%2C5-anhydro-D-fructose reductase.
       0.411
Your Current Organism:
uncultured Lachnospira sp.
NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.