STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaDGeneral stress protein 39. (266 aa)    
Predicted Functional Partners:
accD
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta.
 
 
 0.870
fabF
3-oxoacyl-[acyl-carrier-protein] synthase 2.
 
 0.862
ptsG
EIICBA-Glc.
     
 0.860
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
 0.855
fabZ
(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase.
  
 0.802
SCJ45328.1
Bacterial alpha-L-rhamnosidase.
   
  0.764
SCJ55270.1
Bacterial alpha-L-rhamnosidase.
   
  0.764
fruA
EIIABC-Fru.
  
 0.743
sbcD_1
Nuclease sbcCD subunit D.
    
  0.734
sbcD_3
Nuclease sbcCD subunit D.
    
  0.734
Your Current Organism:
uncultured Lachnospira sp.
NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.